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Entry information : MtPrx17 (Medtr2g029740.1 [4.0] / Medtr2g029740.1 [3.5] / AC234842_24.1)
Entry ID 344
Creation 2006-01-17 (Christophe Dunand)
Last sequence changes 2010-09-15 (Haythem Mhadhbi)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-07-16 (Christophe Dunand)
Peroxidase information: MtPrx17 (Medtr2g029740.1 [4.0] / Medtr2g029740.1 [3.5] / AC234842_24.1)
Name (synonym) MtPrx17 (Medtr2g029740.1 [4.0] / Medtr2g029740.1 [3.5] / AC234842_24.1)
Class Class III peroxidase    [Orthogroup: Prx048]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type N/D
Inducers Cyst nematode infection
Glomus intraradices infection
Nitrogen starvation
Nitrogen treatment
Pathogen interaction
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx17
start..stop		 S start..stop
MtPrx16 622 0 1..355 1..354
MtPrx71 577 0 1..355 1..355
PsPrx13 556 0 1..355 1..357
MtPrx10 546 0 1..355 1..353
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '344' 'join(11109261..11109482,11110098..11110289,11110452..11110617,11111181..11111668)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 11109261..11109482 220 N° 2 11110098..11110289 190 N° 3 11110452..11110617 164 N° 4 11111181..11111668 486
join(11109261..11109482,11110098..11110289,11110452..11110617,11111181..11111668 )


exon

Literature and cross-references MtPrx17 (Medtr2g029740.1 [4.0] / Medtr2g029740.1 [3.5] / AC234842_24.1)
Literature Harrison,M.J. et al., unpublished
DNA ref. Phytozome 12:   chr2 (11109261..11111668)
Cluster/Prediction ref. Phytozome Gene 12:   31065335
Omic ref. Gene atlas:   Mtr.40091.1.S1_at Legoo:   Mtr.40091.1.S1_at
Protein sequence: MtPrx17 (Medtr2g029740.1 [4.0] / Medtr2g029740.1 [3.5] / AC234842_24.1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   355 (328)
PWM (Da):   %s   38575.55 (35764.1) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.41 (8.39) Peptide Signal:   %s   cut: 28 range:28-355
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNSFRVIVTALCCVVVVFGGLPFSSNAQLDPYFYGKTCPKLHSIA
FKVLRKVAKTDPRMPASIIRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNINSLRGLDVINQIKTKVEKACPNRVSCADILTLASGISSVLTGGPGWEVPLGRRDSLTANQSLANQNLPGPNFSLDRLKSAFAAQGLNTVDLVALSG
AHTFGRARCLFILDRLYNFNNTGKPDPTLDTTYLQQLRNQCPQNGTGNNRVNFDPTTPDTLDKNFYNNLQGKKGLLQSDQELFSTPGADTISIVNSFANSQNVFFQNFINSMIKMGNIDV
LTGKKGEIRKQCNFINKKSSELDLGIVASAESMEGDMVSSI

Retrieve as FASTA  
Remarks Complete sequence from 33 ESTs and genomic (chromo 2, 3 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACTCATTTCGTGTCATTGTAACAGCTTTGTGCTGTGTAGTGGTTGTGTTTGGAGGACTACCCTTCTCTTCAAATGCACAACTTGATCCATACTTTTATGGCAAAACTTGTCCCAAA
TTGCATTCTATAGCATTTAAAGTCTTGCGGAAAGTTGCTAAGACGGATCCCCGAATGCCTGCCAGTATCATCAGGCTTCATTTTCATGATTGTTTCGTTCAAAAGTATGTTTCTATTATT
ATGCTTTGCTGTAGTATTTATCATTCACCCCCCAGTTATATATTTGTTAGCATGTGTTGAAAAATACTTTAGGGTTCCACATCTGAAAAATCAAGACAATTAAAAGTGCATACATAACCA
TAAAAGGAGTTGACTGAATTCGATTTATGGGCAATACATTTCTTATGCATGTACTTCCTTATTATTATTTTTTGGCTCTAAAAAAATAACACTAACCAACAATATATGTAGGGTTGGTCT
AAAGGTAAGACTACTAAAACCTTTGTCTAGGCCCTTTCTTGTTAATTTAATAATTGTCATATTTGCCAAAGATTAATAGTGTCATTACTAGTTAATTTTCAACATAATTTTAATGGATTT
ATTTATTTATTTTACTATCTAACTAATAATATTCTCAAGTTATTATTTTATGATAATTAAAATTAGTCAATAGTTTATAAAGTTAATTTAATAAAAAAATTATTCTCTTTCTTTTACTTA
TAATACCTTCTCTCTAATTTATGGGACATAATATGACAATTTTTTATTATCATATATGTATATATGTAGTTTTTGAGATAGAGCACTAAATAACTTGATATTATTTATGATTGAAACAGG
GTTGTGATGCATCAGTTTTGTTGAATAACACCGCAACTATTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCCTTAAGAGGATTGGATGTTATCAATCAAATCAAGACTAAAGTGG
AAAAAGCTTGCCCTAATAGAGTTTCTTGTGCTGATATTCTTACACTTGCGTCTGGAATATCTTCTGTTCTGTGGTACATATTTTTAGTTTCAAGTATTTTCCTATACAACTATACTTTTT
CTTTTTTTGGTAGAATACATATATACATTTTATTTTAATTAGTTAAAATATTATTACTTCTTTAATTTTATTCATTGTATGATCTTAAAATAATACAATCAATCTATTTACACAGACTGG
GGGTCCAGGTTGGGAGGTTCCACTAGGAAGAAGGGATAGTCTAACAGCAAATCAATCCCTTGCCAATCAAAATCTTCCAGGTCCCAACTTCAGTCTAGATCGACTTAAATCTGCCTTTGC
TGCTCAAGGACTTAACACGGTTGACCTAGTAGCACTCTCAGAGGTATATATATACATGCACCATTTTCTAAATGTTATCTATAATGATAACAATATAATTTTTTATCCAACAGTGATATT
TAGATAATATTACCATGAATTTTTTATCATAACAAAGATTTCGAATTTGGATATGATCAATGAACCATATTATTATTAAAACTTCAAATTGTTGAGGAGAGTTGTCAACGCTTTAGACTT
GATGAATAGTCTATGGAGGTGTGGGTTACTCAATTATAAAAAATAAAAAAAATTAGAAAATTAATTTTAAAATCAGTTGACTTTTGAATAACTTGACCATTAAAAAAAGATAAATGTCAT
ACATCAAGATCATTGCCTAATAAGTCGACGAGGACAAAAAAAAAATCTCCTTAACTGTAAATTCATAGGGAAATGCTCTAGAAGTGACCGAAAGATAAGTAAATTTTAGTTAAGAATTGT
TTGATTTATGATTCGAACTTGTATTTTTTTTAGAAAAATTTCGTGATTACAAACACTTTCTCGTAAAACAGTTATGTTGCCACGTCTTTAAATATGATCTCCTTAACTAAACTACTTCAA
CTTCAGGTGCTCATACATTTGGGAGAGCACGTTGCCTTTTCATCCTTGATCGATTATACAACTTCAACAATACTGGCAAACCCGATCCAACTCTTGATACAACATACTTACAACAGTTGC
GAAACCAATGCCCTCAGAATGGAACTGGAAATAACCGTGTTAATTTCGACCCAACGACTCCTGATACATTGGACAAGAACTTCTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAA
GTGACCAAGAATTATTCTCAACACCGGGTGCAGATACCATTAGCATTGTCAACAGCTTTGCAAATAGCCAAAATGTTTTCTTTCAGAACTTTATAAATTCAATGATTAAAATGGGTAATA
TTGATGTGCTTACCGGAAAGAAAGGAGAAATTAGAAAACAATGCAATTTTATTAACAAGAAATCTTCTGAATTGGATCTTGGCATTGTGGCCTCTGCAGAATCAATGGAAGGGGATATGG
TTAGTTCAATCTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACTCATTTCGTGTCATTGTAACAGCTTTGTGCTGTGTAGTGGTTGTGTTTGGAGGACTACCCTTCTCTTCAAATGCACAACTTGATCCATACTTTTATGGCAAAACTTGTCCCAAA
TTGCATTCTATAGCATTTAAAGTCTTGCGGAAAGTTGCTAAGACGGATCCCCGAATGCCTGCCAGTATCATCAGGCTTCATTTTCATGATTGTTTCGTTCAAGGTTGTGATGCATCAGTT
TTGTTGAATAACACCGCAACTATTGTGAGTGAACAAGATGCTTTTCCAAATATCAACTCCTTAAGAGGATTGGATGTTATCAATCAAATCAAGACTAAAGTGGAAAAAGCTTGCCCTAAT
AGAGTTTCTTGTGCTGATATTCTTACACTTGCGTCTGGAATATCTTCTGTTCTGACTGGGGGTCCAGGTTGGGAGGTTCCACTAGGAAGAAGGGATAGTCTAACAGCAAATCAATCCCTT
GCCAATCAAAATCTTCCAGGTCCCAACTTCAGTCTAGATCGACTTAAATCTGCCTTTGCTGCTCAAGGACTTAACACGGTTGACCTAGTAGCACTCTCAGGTGCTCATACATTTGGGAGA
GCACGTTGCCTTTTCATCCTTGATCGATTATACAACTTCAACAATACTGGCAAACCCGATCCAACTCTTGATACAACATACTTACAACAGTTGCGAAACCAATGCCCTCAGAATGGAACT
GGAAATAACCGTGTTAATTTCGACCCAACGACTCCTGATACATTGGACAAGAACTTCTACAACAATCTTCAAGGTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTATTCTCAACACCG
GGTGCAGATACCATTAGCATTGTCAACAGCTTTGCAAATAGCCAAAATGTTTTCTTTCAGAACTTTATAAATTCAATGATTAAAATGGGTAATATTGATGTGCTTACCGGAAAGAAAGGA
GAAATTAGAAAACAATGCAATTTTATTAACAAGAAATCTTCTGAATTGGATCTTGGCATTGTGGCCTCTGCAGAATCAATGGAAGGGGATATGGTTAGTTCAATCTAA

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
GGACAGAAAC TTCAAACACA ATTCTAATAT CATTTAGGGG TAACAATGAA CTCATTTCGT GTCATTGTAA CAGCTTTGTG CTGTGTAGTG GTTGTGTTTG GAGGACTACC CTTCTCTTCA  AATGCACAAC TTGATCCATA CTTTTATGGC AAAACTTGTC CCAAATTGCA TTCTATAGCA TTTAAAGTCT TGCGGAAAGT TGCTAAGACG GATCCCCGAA TGCCTGCCAG TATCATCAGG  CTTCATTTTC ATGATTGTTT CGTTCAAGGT TGTGATGCAT CAGTTTTGTT GAATAACACC GCAACTATTG TGAGTGAACA AGATGCTTTT CCAAATATCA ACTCCTTAAG AGGATTGGAT  GTTATCAATC AAATCAAGAC TAAAGTGGAA AAAGCTTGCC CTAATAGAGT TTCTTGTGCT GATATTCTTA CACTTGCGTC TGGAATATCT TCTGTTCTGA CTGGGGGTCC AGGTTGGGAG  GTTCCACTAG GAAGAAGGGA TAGTCTAACA GCAAATCAAT CCCTTGCCAA TCAAAATCTT CCAGGTCCCA ACTTCAGTCT AGATCGACTT AAATCTGCCT TTGCTGCTCA AGGACTTAAC  ACGGTTGACC TAGTAGCACT CTCAGGTGCT CATACATTTG GGAGAGCACG TTGCCTTTTC ATCCTTGATC GATTATACAA CTTCAACAAT ACTGGCAAAC CCGATCCAAC TCTTGATACA  ACATACTTAC AACAGTTGCG AAACCAATGC CCTCAGAATG GAACTGGAAA TAACCGTGTT AATTTCGACC CAACGACTCC TGATACATTG GACAAGAACT TCTACAACAA TCTTCAAGGT  AAAAAGGGTT TGCTTCAAAG TGACCAAGAA TTATTCTCAA CACCGGGTGC AGATACCATT AGCATTGTCA ACAGCTTTGC AAATAGCCAA AATGTTTTCT TTCAGAACTT TATAAATTCA  ATGATTAAAA TGGGTAATAT TGATGTGCTT ACCGGAAAGA AAGGAGAAAT TAGAAAACAA TGCAATTTTA TTAACAAGAA ATCTTCTGAA TTGGATCTTG GCATTGTGGC CTCTGCAGAA  TCAATGGAAG GGGATATGGT TAGTTCAATC TAAATGAATG TGGGTTACTT TAGATGAAAT GTGGTGATTG GAATTCACTA ATAAAGAGAA GTGCTGGCTA AGCACATTTG TGTCATGAGG 
TATACTGTAT TTTACGTGTT TTATGTGTGT AAGATAACCT TCTTTCAATG TAATTTTCAT TATAAAATCC TTTC 

Retrieve as FASTA