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Entry information : MtPrx71 (Medtr2g028980.1[4.0] / Medtr2g028980.1[3.5] / Medtr2g034550.1[3.0])
Entry ID 396
Creation 2008-10-08 (Christophe Dunand)
Last sequence changes 2010-09-15 (Haythem Mhadhbi)
Sequence status complete
Reviewer Catherine Mathe
Last annotation changes 2016-05-20 (Catherine Mathe)
Peroxidase information: MtPrx71 (Medtr2g028980.1[4.0] / Medtr2g028980.1[3.5] / Medtr2g034550.1[3.0])
Name (synonym) MtPrx71 (Medtr2g028980.1[4.0] / Medtr2g028980.1[3.5] / Medtr2g034550.1[3.0])
Class Class III peroxidase    [Orthogroup: Prx048]
Taxonomy Eukaryota Viridiplantae Streptophyta Fabaceae Medicago
Organism Medicago truncatula (barrel medic)    [TaxId: 3880 ]
Cellular localisation N/D
Tissue type Roots
Inducer Nitrogen starvation
Repressor N/D
Best BLASTp hits
Perox score E-value MtPrx71
start..stop		 S start..stop
MtPrx17 577 0 1..355 1..355
MtPrx16 559 0 1..355 1..354
MtPrx12 538 0 1..355 1..352
MtPrx11 533 0 1..355 1..355
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 10794288..10794509 220 N° 2 10793998..10794189 190 N° 3 10793708..10793873 164 N° 4 10793126..10793613 486
complement(join(10793126..10793613,10793708..10793873,10793998..10794189,1079428 8..10794509))


exon

Literature and cross-references MtPrx71 (Medtr2g028980.1[4.0] / Medtr2g028980.1[3.5] / Medtr2g034550.1[3.0])
Literature Journet,E.P. et al., unpublished.
DNA ref. Phytozome 12:   chr2 (10794509..10793126)
Cluster/Prediction ref. Phytozome Gene 12:   31067932
Omic ref. Gene atlas:   Mtr.31636.1.S1_at  Mtr.31637.1.S1_at
Protein sequence: MtPrx71 (Medtr2g028980.1[4.0] / Medtr2g028980.1[3.5] / Medtr2g034550.1[3.0])
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   355 (336)
PWM (Da):   %s   38759.77 (36673.7) Transmb domain:   %s   i7-29o
PI (pH):   %s   8.35 (8.32) Peptide Signal:   %s   cut: 20 range:20-355
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNSFRLIATFLCCIAVVFGVLPLCSNAQLDPAFYSKTCPNLNSIV
REIVRNFTKIEPRMPAILIRLHFHDCFVQGCDASILLNNTATIVSELQALPNINSIRGLQVVNRIKTDVEKACPNTVSCADILALAARISSVLSKGPGWIVPLGRRDSLTANRTLANQNLPAPFFNLSQLKSSFAAQGLNTVDLVALSG
AHTFGRARCSLFVDRLYNFSNTGEPDPTLDTTYLKQLQNECPQNGPGNNRVNFDPTTPDTLDKNFYNNLQVKKGLLQSDQELFSTPNADTTSIVNNFANNQSAFFESFKKAMIKMGNIGV
LTGKKGEIRKQCNFVNKKSSELDLAALVSTESFDGDMVSSI

Retrieve as FASTA  
Remarks Complete sequence from genomic (chromo 2, 3 introns) and 1 EST (AL373292).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACTCCTTTCGTCTCATAGCAACTTTTTTGTGTTGTATTGCAGTTGTGTTTGGAGTGTTACCTTTATGTTCAAATGCACAGCTTGATCCAGCCTTTTATAGCAAAACTTGTCCAAAT
CTTAATTCCATTGTCCGCGAAATCGTTAGGAACTTTACTAAGATTGAGCCCCGAATGCCTGCGATTCTAATCAGGCTTCACTTTCATGATTGTTTCGTTCAAGTAAGTATATATTATGAA
TTTAATTAGTATACTCTATCAGCTTACAATTATTAATTATGTAAACTGATGATGATATACATTATTAATTATTGAAACAGGGGGTTGCGATGCATCCATTTTGCTGAACAACACTGCTAC
TATCGTGAGCGAACTACAAGCTCTCCCAAATATCAACTCCATAAGAGGTTTGCAAGTTGTGAATCGTATCAAGACAGACGTGGAAAAAGCTTGCCCTAATACAGTTTCTTGTGCTGATAT
TCTTGCACTTGCTGCTAGAATATCTTCCGTCCTGGTACATATATGTCAAGCTAATTATTTTTAGTTTCAAGAAATTAGTTTTACATAAAATCATAATATTTGTGTTTACCTTTTAAAAAA
ATATATGGTCTTAAAATAACATAAATCTATATTCACAGAGAGTAAAGGTCCCGGTTGGATCGTTCCATTGGGAAGAAGGGATAGTCTAACAGCAAATCGAACCCTCGCAAATCAAAATCT
TCCAGCCCCTTTCTTCAATCTAAGTCAACTTAAATCTTCCTTTGCTGCTCAAGGTCTCAACACGGTTGATCTAGTAGCACTCTCAGGTATATATATGACATGAGGTTTTGAAGTTTTCAC
CTAAAAATATTACATTTGATGGAAGAGTATATGATTTACTTATATGCTTGAATATTCCAGGTGTGCACACACATTTGGGAGAGCACGTTGTTCTTTATTCGTTGATCGATTATACAACTT
CAGCAATACTGGCGAACCTGATCCAACTCTTGATACAACGTACTTAAAACAATTGCAAAACGAATGTCCTCAAAATGGACCTGGAAATAACCGTGTAAATTTCGACCCAACTACTCCTGA
TACATTGGACAAGAACTTCTACAACAATCTTCAGGTTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTGTTTTCAACACCAAATGCAGATACCACTAGCATTGTTAATAACTTTGCCAA
TAACCAAAGTGCTTTCTTTGAGAGCTTTAAGAAAGCAATGATTAAAATGGGTAATATTGGTGTGCTTACCGGAAAGAAAGGAGAAATAAGGAAACAATGCAATTTTGTTAACAAAAAATC
TTCTGAGTTAGATCTTGCCGCTCTGGTCTCCACAGAATCATTTGATGGGGATATGGTTAGTTCAATTTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAACTCCTTTCGTCTCATAGCAACTTTTTTGTGTTGTATTGCAGTTGTGTTTGGAGTGTTACCTTTATGTTCAAATGCACAGCTTGATCCAGCCTTTTATAGCAAAACTTGTCCAAAT
CTTAATTCCATTGTCCGCGAAATCGTTAGGAACTTTACTAAGATTGAGCCCCGAATGCCTGCGATTCTAATCAGGCTTCACTTTCATGATTGTTTCGTTCAAGGTTGCGATGCATCCATT
TTGCTGAACAACACTGCTACTATCGTGAGCGAACTACAAGCTCTCCCAAATATCAACTCCATAAGAGGTTTGCAAGTTGTGAATCGTATCAAGACAGACGTGGAAAAAGCTTGCCCTAAT
ACAGTTTCTTGTGCTGATATTCTTGCACTTGCTGCTAGAATATCTTCCGTCCTGAGTAAAGGTCCCGGTTGGATCGTTCCATTGGGAAGAAGGGATAGTCTAACAGCAAATCGAACCCTC
GCAAATCAAAATCTTCCAGCCCCTTTCTTCAATCTAAGTCAACTTAAATCTTCCTTTGCTGCTCAAGGTCTCAACACGGTTGATCTAGTAGCACTCTCAGGTGCACACACATTTGGGAGA
GCACGTTGTTCTTTATTCGTTGATCGATTATACAACTTCAGCAATACTGGCGAACCTGATCCAACTCTTGATACAACGTACTTAAAACAATTGCAAAACGAATGTCCTCAAAATGGACCT
GGAAATAACCGTGTAAATTTCGACCCAACTACTCCTGATACATTGGACAAGAACTTCTACAACAATCTTCAGGTTAAAAAGGGTTTGCTTCAAAGTGACCAAGAATTGTTTTCAACACCA
AATGCAGATACCACTAGCATTGTTAATAACTTTGCCAATAACCAAAGTGCTTTCTTTGAGAGCTTTAAGAAAGCAATGATTAAAATGGGTAATATTGGTGTGCTTACCGGAAAGAAAGGA
GAAATAAGGAAACAATGCAATTTTGTTAACAAAAAATCTTCTGAGTTAGATCTTGCCGCTCTGGTCTCCACAGAATCATTTGATGGGGATATGGTTAGTTCAATTTAA

Retrieve as FASTA