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Entry information : StAPx-R
Entry ID 5187
Creation 2007-04-13 (Christophe Dunand)
Last sequence changes 2007-04-13 (Christophe Dunand)
Sequence status partial
Reviewer Marcel Zamocky
Last annotation changes 2010-08-06 (Christophe Dunand)
Peroxidase information: StAPx-R
Name StAPx-R
Class Ascorbate peroxidase related     [Orthogroup: APx-R001]*
Taxonomy Eukaryota Viridiplantae Streptophyta Solanaceae Solanum
Organism Solanum tuberosum (Potato)    [TaxId: 4113 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value StAPx-R
start..stop		 S start..stop
LeAPx-R 374 2.13e-130 1..205 1..205
LeAPx-R 141 1.12e-39 260..326 260..326
LeAPx-R 48 0.00000193 135..216 196..276
InAPx-R01 298 2.22e-100 35..326 36..341
IaquAPx-R01 294 7.52e-99 63..326 77..339
VvAPx-R 276 3.86e-92 16..323 14..328
Literature and cross-references StAPx-R
Literature Buell,C.R., Hart,A., Baker,B., Tanksley,S., Fry,W., Smart,C., Restrepo,S., Griffiths,H., van der Hoeven,R., Tsai,J. and Karamycheva,S.A. Generation of a set of potato cDNA clones for microarray analyses. Unpublished (2002)
Cluster/Prediction ref. UniGene:   Stu.18916 [5' end]  Stu.2104 [3' end]
Protein sequence: StAPx-R
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   326
PWM (Da):   %s   30436.53 Transmb domain:   %s   i2-24o
PI (pH):   %s   8.19
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MSNTIAVDCW LLNSGVSSFT STSKLYSPAN FSRTAHFGSN TIRASATTNG SSEGVIYKAL SCGRRALLSM ITLPLVMPCE PINNSVGAIA ADESFRLREE IRKVLSKGKA AGVLRLVFHD  AGTFEIDEKT GGMNGSIVYE LDRPENKGLK KSLKILDKAK SQIDLVQSVS WADIIALAGA EAVSLCGGPS IPIQLGYFKI LMEKPWLSSG GMTSMVxxxx xxxxxxxxxx xxxxxxxxxx 
xxxxxxxxxx xxxxxxxxxI LMKKPWLSSG GMTSMVGLPS DRALVEDDEC VGWISKYAED QSLFFDDFKN AYTKLVDTGA TWKKAL 

Retrieve as FASTA  
Remarks Partial sequence from 9 ESTs (UniGene Stu.2104 and UniGene Stu.18916) No overlap between the two Unigene, VALS is missing in this gap. Also TC154891, TC160373 and TC152286. Cultivar="Kennebec or Binjte".