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Entry information : PcLDS01
Entry ID 6649
Creation 2009-03-29 (Christophe Dunand)
Last sequence changes 2012-03-28 (Catherine Mathe (Scipio))
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2015-12-23 (Christophe Dunand)
Peroxidase information: PcLDS01
Name PcLDS01
Class Linoleate diol synthase (PGHS like)    [Orthogroup: LDS001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Corticiaceae Phanerochaete
Organism Phanerochaete chrysosporium    [TaxId: 5306 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value PcLDS01
start..stop		 S start..stop
PplLDS01-1 877 0 61..1002 69..1004
PplLDS01-2 861 0 61..1003 69..1005
JargLDS01 796 0 21..928 19..933
LbiLDS01 784 0 21..802 20..820
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 29258..29407 148 N° 2 29061..29208 146 N° 3 28745..29008 262 N° 4 28540..28695 154
N° 5 28377..28486 108 N° 6 27855..28321 465 N° 7 27767..27801 33 N° 8 27581..27714 132
N° 9 27462..27526 63 N° 10 27343..27376 32 N° 11 26611..27291 679 N° 12 26475..26560 84
N° 13 25924..26422 497 N° 14 25726..25805 78 N° 15 25576..25672 95 N° 16 25487..25507 19
complement(join(25487..25507,25576..25672,25726..25805,25924..26422,26475..26560 ,26611..27291,27343..27376,27462..27526,27581..27714,27767..27801,27855..28321,2 8377..28486,28540..28695,28745..29008,29061..29208,29258..29407))


exon

Literature and cross-references PcLDS01
Literature Martinez,D., Larrondo,L.F., Putnam,N., Sollewijn Gelpke,M.D., Huang,K., Chapman,J., Helfenbein,K.G., Ramaiya,P., Detter,J.C., Larimer,F., Coutinho,P.M., Henrissat,B., Berka,R., Cullen,D. and Rokhsar,D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat. Biotechnol. 22 (6), 695-700 (2004)
DNA ref. JGI genome:   scaffold_31 (29407..25487)
Protein sequence: PcLDS01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   1008
PWM (Da):   %s   111499.22 Transmb domain:   %s   o299-317i330-352o382-399i430-452o480-502i673-690o
PI (pH):   %s   5.86
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MGNMISEFKAELAERHTRLLSHTPPNEDGGRPHCHAPTDIVRDESAFRELINLCEDMRDALGGEGIDDRHLLLEKVLTWMATHSELDVEHRLESMVVEFLYKDLPHPPESYLSLPNEATH
VPRSDVNYAFRPADGSNYNVMTPALGKAGTPYARSVPSARSLPASALPDASLVFDMLLKRDEFVPHPDGVSSLFFAFADLVIHSIFNTDRNDSTINNSSSYLDLSPLYGSSDKQVDTVRR
KDGTGRLKEDVFADSRLLFMPPSACALLVLLCRNHYIADKMLAINEHGKFHAPETLEAPGRLAQDDELFARARLVNCGFFMQIILGDYVGAILGLARDGHAWRLKILEPYRSPTGGVVPR
GEGNAVSAEFNLMYRWHATLSAPDTAWIEQEFRALFPGRDLATLTKEDFGRAYGHIRSRSAKEPQEWTFGGLKRGESGRYQVELAQILQNATEAEAGAFRARGIPEVMKVVELMAIEQAR
SWGTCLNEFRRFMGLKRKYIYVPYCGIFSEWNSDESVRAAQMLYHDIDNLELYVGLEAEEAKKPGPGAGLCPGYTLSRAILSDAVCLTRGDRFMTTDFTPQNLTAWGYNDCQFDVNDGSY
GGMLTKLLFRTLPDCYPAGSVYAHFPFLVPKRMRKEFLSRDAALLDQYTWDRPVLPTSLLELPRPPPAYEARVRALTGRPATAFTGLEQVLFTPDALEAHRLSFLRFTDAQLHHQSLSIG
GSKRYVDIVRDVVNMVPIFWIAAMIRPDATEAHDEGKHYRPDRYFQGFADLADYVYVNTDPSREFALRQRAQAVAASISKHVVGDAASLGMFDLISRIARRLQSALHTLEGSPLSPDGFV
AQPPCAVPDVASFLPTLRLCGNSQGLASAFVGDLAASAAVLARCVARLVDRLLDGETHLRNELALAGLGVTDKQIAEQVYEAVRGMDDVGVEHGYVALTVPAMLHCIFSLPNLQRAPGPS
GKLHRVVEGHDGAIVEVASYQNWKGEVTPWPSSLAVVVIDAT*

Retrieve as FASTA  
Remarks Complete sequence from genomic (17 introns) and 1 EST (DV759138). Strain="RP-78".
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCAACATGATTTCCGAGTTCAAGGCTGAGCTTGCTGAGAGGCACACCCGCCTCCTTTCCCACACACCGCCCAACGAGGACGGCGGCCGCCCTCATTGCCATGCGCCAACAGACATT
GTGCGCGACGAGTCGGCCTTCCGTGAGCTGGTACGTCCGGACGGCCTCCACGGCTGCCACCCTCTAACAAGCCGGACAGATATCAACCTCTGCGAAGATATGCGGGATGCCCTCGGTGGC
GAGGGCATCGACGACCGCCACCTGCTCCTCGAGAAGGTCCTCACCTGGATGGCGACGCACAGCGAACTGGACGTCGAGCACCGGCTCGAGAGCATGGTCGTCGAGTTCCGTACGTCGACA
CCTGCGCCGCATCTCTGCGCTCATACTCACTGCCCCCACAGTGTGTACAAGGACCTGCCACACCCGCCAGAGTCGTACCTCTCACTCCCGAACGAGGCTACGCACGTGCCCCGCTCAGAT
GTCAACTACGCCTTCCGCCCTGCGGACGGCTCGAATTACAACGTCATGACCCCTGCCCTCGGCAAGGCGGGCACGCCCTACGCACGGTCAGTACCCTCGGCACGCTCGCTCCCAGCGTCC
GCGCTGCCCGACGCAAGTCTCGTCTTCGACATGCTCCTCAAGCGCGACGAGTTTGTGCCGCACCCAGGTACGCATCAACAATTTGGCGTCCCCACAGATTCTCACCGCGCCCCCAGACAC
GGCGTTTCAAGCCTGTTCTTCGCATTTGCGGACCTCGTCATCCACTCGATCTTCAACACGGACCGCAACGACTCGACGATCAACAACTCGAGCAGCTACCTCGACCTCAGCCCGCTCTAC
GGCAGCTCGGACAAGCAGGTTGACACCGTTCGACGTGAGTTTCCGCACAGCCCGGTGGCATTAGCGCTAACTGGATTGATTTTGCAGGCGCAAGGACGGCACGGGCCGCCTGAAGGAGGA
TGTCTTCGCGGACAGCCGGCTGCTGTTCATGCCGCCCTCGGCGTGCGCACTACTCGTGCTGCTCTGCCGGAACCATAACGTGCGTGTCCCAACTATTTCCTCGCTCACGTTCCACCTGCC
AACGCTGCGCGCAGTATATATCGCCGACAAGATGCTCGCGATCAACGAGCACGGGAAGTTCCACGCGCCCGAGACACTCGAAGCCCCGGGACGACTGGCGCAGGACGACGAGCTCTTCGC
GCGCGCGCGCCTCGTGAACTGCGGGTTCTTCATGCAGATCATTCTCGGCGACTATGTCGGCGCGATTCTCGGGCTCGCGCGCGACGGGCACGCATGGCGGCTCAAGATCCTCGAGCCGTA
CCGCAGCCCGACCGGCGGCGTCGTCCCGCGCGGCGAGGGCAACGCCGTCTCGGCCGAGTTCAACCTCATGTACCGCTGGCACGCGACGCTCTCCGCGCCCGACACGGCGTGGATCGAGCA
GGAGTTCCGCGCGCTGTTCCCCGGCCGCGACCTCGCGACGCTCACGAAGGAGGACTTTGGCAGGGCGTACGGCCACATACGTTCCCGCTCCGCCAAGGAGCCGCAGGAGTGGACCTTTGG
AGGGTGCGTCCCTCGGCATGGTGCCGCTGCGAGCTCGGGTCTGACAATGTCTGCAGCCCCTTAAGCGCGGCGAGTCGGGACGCTACCAGGACGGTAAGTCGTATCTCTCCAAACCCGTGC
ATCGCCGATGCTGACATCGCCGTAGTGTGGAGCTTGCACAGATTCTGCAGAACGCCACCGAGGCCGAGGCCGGCGCTTTCCGCGCTCGCGGCATTCCTGAGGTCATGAAGGTCGTCGAGC
TCATGGCAATCGAGCAGGCGAGGAGCTGGGGCACATGCTCAGTAAGCAAAATATACACCCCTCACAATGATCTACCCGCTAACGTTCGAGCATAGCTCTCAACGAGTTCAGGCGGTTCAT
GGGTCTCAAGCGTAAGTACATTTATGTCCCTTACTGCGGGATGTGGTGCTGATGCAACTATCTGCAGCATATGCTAGGTCGGACCGTACCATAATCTCAGTTATTCCACTGCTGACTGTT
GTCACAGCTCTTCTCTGAGTGGAACTCGGACGAAAGCGTTGCTGTGCGTAGTCTCGGAGCTATTAAACATTCCTTCCTCTGATACCTGTCGCAGAGAGGGCCGCGCAGATGCTATACCAC
GACATTGACAACCTGGAGCTTTACGTTGGCTTGGAGGCCGAGGAGGCCAAGAAGCCCGGCCCCGGCGCGGGCCTGTGTCCTGGCTACACGCTCTCGCGCGCCATTCTCTCCGACGCCGTC
TGCCTCACGCGCGGCGACCGGTTCATGACGACCGATTTCACACCGCAGAACCTGACAGCCTGGGGCTACAACGACTGCCAGTTCGACGTCAACGACGGCTCGTACGGCGGCATGCTCACG
AAGCTCCTCTTCCGCACCCTGCCGGACTGCTACCCGGCTGGCAGCGTGTATGCACACTTCCCGTTCCTCGTCCCGAAGCGCATGCGCAAGGAGTTCCTCTCCCGCGACGCCGCGCTCCTT
GATCAGTACACGTGGGACCGCCCCGTGCTGCCCACATCTCTCCTCGAGCTCCCGCGCCCGCCCCCTGCGTACGAGGCGCGCGTGCGTGCGCTCACGGGCCGCCCCGCCACTGCCTTCACT
GGACTCGAGCAGGTTCTGTTCACCCCCGACGCCCTTGAGGCGCACCGCCTCAGCTTCCTGCGCTTCACGGATGCACAGCTGCACCACCAGTCGCTCTCCATCGGCGGCAGCAAGCGGTAC
GTCGACATTGTCCGCGATGTCGTCAACATGGTACCCATCTTCTGGATTGCCGCTATGGTCACTATTCATACATTTTCAGCTTGATCGGTCTCTAATGAGCTTCGCAGATATCCGGCCAGA
TGCTACGGAGGCGCATGACGAAGGCAAGCACTACCGTCCCGACCGGTACTTCCAGGGCTTTGCCGACCTCGCCGAGTACGTGTCCTTTGAGCTGACATCATTCGCGTGTCATTGAAATGT
ATCACAGCTCTACGTTTATGTCAACACCGACCCCAGCCGCGAGTTCGCGCTGCGGCAACGCGCCCAGGCCGTCGCAGCAAGCATCTCGAAGCACGTCGTCGGCGACGCTGCATCACTCGG
GATGTTCGACCTCATCTCTCGCATCGCGCGCCGTCTCCAGTCTGCGCTCCACACCCTCGAGGGCTCGCCGCTGTCGCCGGACGGCTTCGTGGCGCAGCCGCCGTGCGCCGTCCCCGACGT
CGCGTCTTTCCTTCCGACCCTCCGGCTGTGCGGCAACTCCCAGGGCCTCGCCTCCGCCTTTGTCGGCGACCTGGCGGCGTCAGCGGCGGTGTTGGCGCGCTGCGTCGCGCGCCTCGTGGA
CCGCCTGCTCGACGGCGAGACGCACCTCCGCAACGAGCTTGCGCTGGCGGGCCTTGGCGTGACCGATAAGCAGATTGCGGAGCAGGTGTACGAGGCGGTTCGCGGCATGGACGATGTTGG
CGTCGAGCATGGGTACGTCGCTCTCATTGTATTGATCACAGCGCCTGTCTAATGCGGGTCGCAACAGTCTCATGGATAAGCGTTTCATTGAGGCGGTAAGTCGTATGTAGTGAATTTTGC
ACGGCGTGTCTGACCAGCAGTTGCAGACACTGTACCCGCCATGCTGCATTGCATCTTCAGCCTGCCCAACCTCCAGCGCGCTCCTGGTCCGTCTGGTAAACTCCATCGGTTCGTGTCTTT
GTGACTCTCCCTGTGCGTACATTCTGAATTCTCCTGTGCAGAGAGTCGTTGAGGGGCATGACGGCGCGATCGTCGAGGTTGCCTCGTACCAAAACTGGAAGGGCGAGGTCACACCATGGC
CCTCTTCCCTGGCTGTCGAGGTATGTCTATGTGCCCGTTACAAGGATTACGCCTGCTGATTTGACGTTCAGTACTCCGAACTCCTCAGGTGTTGTAATTGATGCAACGTAG

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGGCAACATGATTTCCGAGTTCAAGGCTGAGCTTGCTGAGAGGCACACCCGCCTCCTTTCCCACACACCGCCCAACGAGGACGGCGGCCGCCCTCATTGCCATGCGCCAACAGACATT
GTGCGCGACGAGTCGGCCTTCCGTGAGCTGATCAACCTCTGCGAAGATATGCGGGATGCCCTCGGTGGCGAGGGCATCGACGACCGCCACCTGCTCCTCGAGAAGGTCCTCACCTGGATG
GCGACGCACAGCGAACTGGACGTCGAGCACCGGCTCGAGAGCATGGTCGTCGAGTTCCTGTACAAGGACCTGCCACACCCGCCAGAGTCGTACCTCTCACTCCCGAACGAGGCTACGCAC
GTGCCCCGCTCAGATGTCAACTACGCCTTCCGCCCTGCGGACGGCTCGAATTACAACGTCATGACCCCTGCCCTCGGCAAGGCGGGCACGCCCTACGCACGGTCAGTACCCTCGGCACGC
TCGCTCCCAGCGTCCGCGCTGCCCGACGCAAGTCTCGTCTTCGACATGCTCCTCAAGCGCGACGAGTTTGTGCCGCACCCAGACGGCGTTTCAAGCCTGTTCTTCGCATTTGCGGACCTC
GTCATCCACTCGATCTTCAACACGGACCGCAACGACTCGACGATCAACAACTCGAGCAGCTACCTCGACCTCAGCCCGCTCTACGGCAGCTCGGACAAGCAGGTTGACACCGTTCGACGC
AAGGACGGCACGGGCCGCCTGAAGGAGGATGTCTTCGCGGACAGCCGGCTGCTGTTCATGCCGCCCTCGGCGTGCGCACTACTCGTGCTGCTCTGCCGGAACCATAACTATATCGCCGAC
AAGATGCTCGCGATCAACGAGCACGGGAAGTTCCACGCGCCCGAGACACTCGAAGCCCCGGGACGACTGGCGCAGGACGACGAGCTCTTCGCGCGCGCGCGCCTCGTGAACTGCGGGTTC
TTCATGCAGATCATTCTCGGCGACTATGTCGGCGCGATTCTCGGGCTCGCGCGCGACGGGCACGCATGGCGGCTCAAGATCCTCGAGCCGTACCGCAGCCCGACCGGCGGCGTCGTCCCG
CGCGGCGAGGGCAACGCCGTCTCGGCCGAGTTCAACCTCATGTACCGCTGGCACGCGACGCTCTCCGCGCCCGACACGGCGTGGATCGAGCAGGAGTTCCGCGCGCTGTTCCCCGGCCGC
GACCTCGCGACGCTCACGAAGGAGGACTTTGGCAGGGCGTACGGCCACATACGTTCCCGCTCCGCCAAGGAGCCGCAGGAGTGGACCTTTGGAGGCCTTAAGCGCGGCGAGTCGGGACGC
TACCAGGACGTGGAGCTTGCACAGATTCTGCAGAACGCCACCGAGGCCGAGGCCGGCGCTTTCCGCGCTCGCGGCATTCCTGAGGTCATGAAGGTCGTCGAGCTCATGGCAATCGAGCAG
GCGAGGAGCTGGGGCACATGCTCACTCAACGAGTTCAGGCGGTTCATGGGTCTCAAGCGTAAGTACATTTATGTCCCTTACTGCGGGATCTTCTCTGAGTGGAACTCGGACGAAAGCGTT
GCTAGGGCCGCGCAGATGCTATACCACGACATTGACAACCTGGAGCTTTACGTTGGCTTGGAGGCCGAGGAGGCCAAGAAGCCCGGCCCCGGCGCGGGCCTGTGTCCTGGCTACACGCTC
TCGCGCGCCATTCTCTCCGACGCCGTCTGCCTCACGCGCGGCGACCGGTTCATGACGACCGATTTCACACCGCAGAACCTGACAGCCTGGGGCTACAACGACTGCCAGTTCGACGTCAAC
GACGGCTCGTACGGCGGCATGCTCACGAAGCTCCTCTTCCGCACCCTGCCGGACTGCTACCCGGCTGGCAGCGTGTATGCACACTTCCCGTTCCTCGTCCCGAAGCGCATGCGCAAGGAG
TTCCTCTCCCGCGACGCCGCGCTCCTTGATCAGTACACGTGGGACCGCCCCGTGCTGCCCACATCTCTCCTCGAGCTCCCGCGCCCGCCCCCTGCGTACGAGGCGCGCGTGCGTGCGCTC
ACGGGCCGCCCCGCCACTGCCTTCACTGGACTCGAGCAGGTTCTGTTCACCCCCGACGCCCTTGAGGCGCACCGCCTCAGCTTCCTGCGCTTCACGGATGCACAGCTGCACCACCAGTCG
CTCTCCATCGGCGGCAGCAAGCGGTACGTCGACATTGTCCGCGATGTCGTCAACATGGTACCCATCTTCTGGATTGCCGCTATGATCCGGCCAGATGCTACGGAGGCGCATGACGAAGGC
AAGCACTACCGTCCCGACCGGTACTTCCAGGGCTTTGCCGACCTCGCCGACTACGTTTATGTCAACACCGACCCCAGCCGCGAGTTCGCGCTGCGGCAACGCGCCCAGGCCGTCGCAGCA
AGCATCTCGAAGCACGTCGTCGGCGACGCTGCATCACTCGGGATGTTCGACCTCATCTCTCGCATCGCGCGCCGTCTCCAGTCTGCGCTCCACACCCTCGAGGGCTCGCCGCTGTCGCCG
GACGGCTTCGTGGCGCAGCCGCCGTGCGCCGTCCCCGACGTCGCGTCTTTCCTTCCGACCCTCCGGCTGTGCGGCAACTCCCAGGGCCTCGCCTCCGCCTTTGTCGGCGACCTGGCGGCG
TCAGCGGCGGTGTTGGCGCGCTGCGTCGCGCGCCTCGTGGACCGCCTGCTCGACGGCGAGACGCACCTCCGCAACGAGCTTGCGCTGGCGGGCCTTGGCGTGACCGATAAGCAGATTGCG
GAGCAGGTGTACGAGGCGGTTCGCGGCATGGACGATGTTGGCGTCGAGCATGGGTACGTCGCTCTCATTACTGTACCCGCCATGCTGCATTGCATCTTCAGCCTGCCCAACCTCCAGCGC
GCTCCTGGTCCGTCTGGTAAACTCCATCGAGTCGTTGAGGGGCATGACGGCGCGATCGTCGAGGTTGCCTCGTACCAAAACTGGAAGGGCGAGGTCACACCATGGCCCTCTTCCCTGGCT
GTCGAGGTTGTAATTGATGCAACGTAG

Retrieve as FASTA